Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

6812 9 + 50604032 - 50604993 2 69

CTG ...

LRR ...

6815 9 - 21140805 - 21140996 2 69

CTG ...

LVA ...

6817 9 - 31161898 - 31163436 3 111

TTG ...

LML ...

6819 9 + 110035490 - 110036844 2 120

TTG ...

LHG ...

6821 9 + 45068357 - 45070687 2 48

TTG ...

LKF ...

6823 9 - 110626109 - 110626248 2 45

CTG ...

LNL ...

6825 9 + 21474638 - 21476534 2 99

CTG ...

LMT ...

6827 9 - 56136643 - 56145533 2 138

TTG ...

LMH ...

6829 9 - 31163417 - 31164709 3 171

CTG ...

LPE ...

6831 9 - 31163417 - 31168716 3 144

ATG ...

MLK ...

6833 9 - 78479451 - 78479641 2 102

ATG ...

MSI ...

6835 9 - 78478835 - 78478975 2 42

CTG ...

LTT ...

6837 9 - 45973046 - 45975109 2 48

ATG ...

MES ...

6839 9 - 78478835 - 78478990 2 57

GTG ...

VLR ...

6841 9 - 31163417 - 31164640 2 102

ATG ...

MCI ...

6843 9 - 104324168 - 104324650 2 45

ATG ...

MIR ...

6846 9 - 58526339 - 58528512 4 120

TTG ...

LLF ...

6849 10 + 81073273 - 81073332 1 60

GTG ...

VCT ...

6851 9 - 64725544 - 64726716 2 132

CTG ...

LIV ...

6854 10 + 18853538 - 18853681 1 144

ATG ...

MGT ...

6856 9 - 64725544 - 64726719 2 135

ATG ...

MLI ...

6858 10 + 36997415 - 36997465 1 51

TTG ...

LSI ...

6860 10 - 123013642 - 123013680 1 39

GTG ...

VGC ...

6863 9 - 31163417 - 31164643 2 105

TTG ...

LMC ...

6865 9 + 20645453 - 20646636 3 96

CTG ...

LAP ...

6867 9 + 43319375 - 43320412 2 102

TTG ...

LKM ...

6869 9 + 59668622 - 59668937 2 84

CTG ...

LLR ...

6871 9 - 45930903 - 45931347 2 81

ATG ...

MES ...

6873 9 + 108942103 - 108944074 2 99

CTG ...

LAV ...

6875 9 + 25288248 - 25289590 2 84

GTG ...

VNR ...

6878 10 - 43989123 - 43989197 1 75

GTG ...

VNW ...

6880 9 + 122368166 - 122375911 2 102

GTG ...

VEM ...

6883 9 + 43319369 - 43320412 2 108

TTG ...

LRL ...

6885 9 + 59668652 - 59668937 2 54

CTG ...

LRS ...

6887 9 - 31163417 - 31168806 3 234

ATG ...

MTP ...

6889 9 + 7272980 - 7273913 2 48

ATG ...

MVP ...

6891 9 + 20645487 - 20646659 4 105

GTG ...

VLL ...

6894 9 - 79662570 - 79672933 2 57

GTG ...

VNL ...

6896 10 + 79710302 - 79710406 1 105

GTG ...

VRE ...

6898 9 + 43792121 - 43792451 2 63

CTG ...

LHC ...

6900 10 + 128351236 - 128351268 1 33

ATG ...

MRL ...

6902 9 + 21735322 - 21737232 2 51

CTG ...

LQG ...

6904 9 - 75532564 - 75559563 2 93

GTG ...

VWA ...

6906 9 - 78479451 - 78479629 2 90

TTG ...

LEA ...

6908 1 - 153158931 - 153158975 1 45

CTG ...

LDV ...

6910 9 - 31163417 - 31168779 3 207

ATG ...

MRR ...

6912 9 - 78479451 - 78479671 2 132

CTG ...

LTS ...

6914 9 - 31163417 - 31164688 3 150

GTG ...

VTL ...

6916 10 + 88737141 - 88737188 1 48

TTG ...

LTV ...

6918 9 - 67036113 - 67047868 2 99

CTG ...

LKM ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5