Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

59881 4 + 131865259 - 131867604 2 228

CTG ...

LLI ...

59885 4 + 138310703 - 138310869 2 78

ATG ...

MPS ...

59887 4 + 53840716 - 53847477 2 69

CTG ...

LLA ...

59890 4 - 116636604 - 116637800 2 105

CTG ...

LNK ...

59892 10 + 4439684 - 4439755 1 72

TTG ...

LFV ...

59894 4 - 122863080 - 122864646 2 72

CTG ...

LTT ...

59896 4 + 14936442 - 14938514 2 129

ATG ...

MEP ...

59899 4 - 129309766 - 129328696 3 288

CTG ...

LGT ...

59901 4 + 62360838 - 62386110 4 213

GTG ...

VKT ...

59903 4 + 154156247 - 154167139 2 78

CTG ...

LWS ...

59905 4 - 124682076 - 124682440 2 276

GTG ...

VFF ...

59908 4 + 125066846 - 125068013 2 114

CTG ...

LSP ...

59910 4 + 117564815 - 117587802 3 219

GTG ...

VPF ...

59912 4 + 107890173 - 107892230 3 96

GTG ...

VGE ...

59914 4 + 108834789 - 108853198 3 159

CTG ...

LFA ...

59916 4 - 48194694 - 48196876 2 90

TTG ...

LTY ...

59918 10 - 57517161 - 57517229 1 69

TTG ...

LDW ...

59920 4 - 129310092 - 129317782 3 201

ATG ...

MSL ...

59922 4 + 116079442 - 116087687 3 123

TTG ...

LER ...

59925 4 + 127025994 - 127026276 2 192

TTG ...

LES ...

59928 10 + 42803922 - 42803999 1 78

CTG ...

LLQ ...

59930 4 - 133996717 - 134000388 3 252

CTG ...

LAV ...

59932 1 + 70264970 - 70265086 1 117

GTG ...

VGL ...

59934 4 - 133266834 - 133268338 3 231

TTG ...

LCL ...

59936 4 + 14930724 - 14938514 3 177

CTG ...

LSA ...

59938 4 + 132719271 - 132721359 2 123

GTG ...

VIG ...

59940 4 - 134164729 - 134167433 2 174

GTG ...

VIQ ...

59942 10 - 7770353 - 7770496 1 144

CTG ...

LRK ...

59945 4 - 154158371 - 154160123 2 234

CTG ...

LWR ...

59947 4 + 136316382 - 136317114 2 129

TTG ...

LMK ...

59949 4 - 139104004 - 139105109 3 129

CTG ...

LLI ...

59951 4 - 133266834 - 133268404 3 297

GTG ...

VGA ...

59953 4 + 122836303 - 122844010 2 93

TTG ...

LVL ...

59955 4 + 14938549 - 14952644 4 216

GTG ...

VGR ...

59957 4 + 139363665 - 139364960 3 162

GTG ...

VVL ...

59961 4 - 109064491 - 109065736 2 264

TTG ...

LGG ...

59964 4 + 107894927 - 107896948 2 90

CTG ...

LQE ...

59966 4 - 116637720 - 116638968 3 210

TTG ...

LLR ...

59968 4 - 141067564 - 141070161 3 240

CTG ...

LPP ...

59971 4 - 41740944 - 41741165 2 105

CTG ...

LGT ...

59973 4 + 127022850 - 127023321 2 210

CTG ...

LEK ...

59975 4 + 123909649 - 123909844 2 42

ATG ...

MKN ...

59978 4 - 107056027 - 107057560 2 267

TTG ...

LEQ ...

59980 4 - 150907092 - 150908453 4 186

TTG ...

LNT ...

59982 4 - 62511518 - 62511726 2 120

GTG ...

VAL ...

59984 4 - 129317692 - 129317890 2 96

ATG ...

MQR ...

59987 4 + 130362691 - 130365172 2 165

GTG ...

VYC ...

59989 4 + 119235354 - 119236776 2 48

GTG ...

VKE ...

59992 4 + 107197546 - 107200523 2 225

GTG ...

VMV ...

59995 4 + 155587458 - 155588656 3 186

CTG ...

LDT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5