Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

4626 10 + 81073197 - 81073382 1 186

GTG ...

VNH ...

4628 7 + 120645175 - 120645237 1 63

TTG ...

LPT ...

4630 10 - 57519493 - 57519522 1 30

ATG ...

MGM ...

4633 7 - 97592074 - 97592124 1 51

GTG ...

VRH ...

4635 7 + 143066648 - 143066782 1 135

TTG ...

LVP ...

4637 7 - 99479864 - 99479935 1 72

GTG ...

VET ...

4639 7 - 15950365 - 15950406 1 42

CTG ...

LEA ...

4641 7 + 100494285 - 100494335 1 51

ATG ...

MVA ...

4643 7 + 80220892 - 80220927 1 36

CTG ...

LRL ...

4645 10 + 18855725 - 18855784 1 60

CTG ...

LLI ...

4647 7 - 80723077 - 80723834 2 108

TTG ...

LGR ...

4649 7 - 28918732 - 28919085 3 192

CTG ...

LFL ...

4651 7 - 45735329 - 45742149 2 111

CTG ...

LSA ...

4653 7 + 43812983 - 43813232 2 63

GTG ...

VNP ...

4655 10 - 62299155 - 62299265 1 111

TTG ...

LIT ...

4658 7 - 31071301 - 31072092 2 84

ATG ...

MIL ...

4661 7 - 142376708 - 142376864 2 63

ATG ...

MNY ...

4663 10 - 62286295 - 62286468 1 174

CTG ...

LME ...

4666 7 + 43795576 - 43796039 2 162

GTG ...

VPT ...

4668 7 - 28544167 - 28544501 2 186

CTG ...

LTA ...

4671 7 - 30623489 - 30624556 2 84

TTG ...

LTA ...

4674 7 + 30754799 - 30755993 5 156

TTG ...

LST ...

4676 7 - 31070701 - 31072123 6 219

ATG ...

MCV ...

4678 7 - 31070701 - 31072180 6 276

GTG ...

VSR ...

4680 7 - 30192347 - 30192552 2 81

GTG ...

VKK ...

4683 7 + 24637225 - 24638920 3 210

CTG ...

LYR ...

4685 7 - 80228242 - 80228415 2 57

ATG ...

MPS ...

4687 7 + 43845373 - 43847031 2 108

CTG ...

LWG ...

4690 7 - 30623489 - 30624601 2 129

CTG ...

LKT ...

4692 7 + 28813364 - 28813867 2 48

TTG ...

LWK ...

4694 7 + 125565693 - 125567177 2 54

CTG ...

LSD ...

4697 10 - 76604048 - 76604128 1 81

TTG ...

LEK ...

4699 7 + 24637174 - 24638920 3 261

ATG ...

MLS ...

4701 7 - 80336427 - 80337039 3 162

GTG ...

VLC ...

4704 7 - 126989919 - 126992350 2 90

CTG ...

LIS ...

4707 7 + 140835731 - 140836815 2 90

GTG ...

VDG ...

4710 7 + 66743733 - 66764236 2 81

CTG ...

LAL ...

4713 7 + 19202538 - 19202995 2 78

TTG ...

LGP ...

4715 7 - 143534408 - 143535718 2 78

GTG ...

VTW ...

4718 1 - 153150736 - 153150864 1 129

GTG ...

VDG ...

4721 7 + 141402213 - 141402776 2 150

CTG ...

LDE ...

4723 7 + 126767807 - 126768571 2 48

TTG ...

LGC ...

4725 7 - 28544541 - 28545272 2 54

ATG ...

MTN ...

4727 7 + 141469293 - 141469556 2 144

GTG ...

VAQ ...

4729 7 + 30754767 - 30755988 4 183

ATG ...

MVQ ...

4731 7 + 108940979 - 108941470 2 39

TTG ...

LRP ...

4733 7 - 31071301 - 31072104 3 96

TTG ...

LQI ...

4735 7 + 3704369 - 3704673 2 108

CTG ...

LGL ...

4737 7 + 43813002 - 43813344 2 156

ATG ...

MYR ...

4739 7 - 30192347 - 30192567 2 96

TTG ...

LRP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5