Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

38040 17 + 33919943 - 33920092 1 150

GTG ...

VGV ...

38042 1 - 153487529 - 153487585 1 57

CTG ...

LRT ...

38044 17 + 36856994 - 36857029 1 36

CTG ...

LLR ...

38046 17 - 80204141 - 80204200 1 60

CTG ...

LCL ...

38048 17 + 6084552 - 6084608 1 57

ATG ...

MTR ...

38050 1 - 153234403 - 153234585 1 183

CTG ...

LQN ...

38052 17 + 43016627 - 43016797 1 171

TTG ...

LIV ...

38054 17 + 20956972 - 20957157 1 186

CTG ...

LAV ...

38056 17 - 64308968 - 64309123 1 156

CTG ...

LKM ...

38058 17 - 15526359 - 15526544 1 186

TTG ...

LGT ...

38060 17 + 35883151 - 35883366 1 216

CTG ...

LSA ...

38062 17 - 65613216 - 65613479 1 264

CTG ...

LLS ...

38064 17 + 33825607 - 33825654 1 48

CTG ...

LQA ...

38067 17 - 33939535 - 33939660 1 126

CTG ...

LAL ...

38069 17 + 34906783 - 34906881 1 99

CTG ...

LPN ...

38071 17 - 34864721 - 34864822 1 102

CTG ...

LNE ...

38073 17 + 33913587 - 33913730 1 144

TTG ...

LEN ...

38075 17 + 35264022 - 35264084 1 63

CTG ...

LQS ...

38077 17 + 53479270 - 53479302 1 33

CTG ...

LEP ...

38079 17 + 35881368 - 35881526 1 159

TTG ...

LED ...

38081 17 - 35667830 - 35667955 1 126

CTG ...

LAH ...

38083 17 + 44085354 - 44085632 1 279

CTG ...

LPH ...

38085 17 + 44082770 - 44083006 1 237

CTG ...

LAG ...

38087 17 + 44085576 - 44085632 1 57

GTG ...

VHT ...

38089 17 - 34030558 - 34030605 1 48

CTG ...

LGD ...

38092 17 - 25919482 - 25919547 1 66

CTG ...

LAA ...

38094 17 + 33910493 - 33910675 1 183

ATG ...

MKL ...

38096 1 - 135419196 - 135419417 1 222

CTG ...

LLP ...

38098 17 + 12922617 - 12922736 1 120

CTG ...

LST ...

38100 17 + 25093156 - 25093242 1 87

CTG ...

LDQ ...

38102 17 + 29681921 - 29682058 1 138

GTG ...

VFD ...

38104 17 + 25092942 - 25092986 1 45

TTG ...

LDL ...

38106 17 - 34603391 - 34603567 1 177

GTG ...

VCV ...

38108 17 + 27029356 - 27029544 1 189

TTG ...

LPS ...

38110 17 - 33939535 - 33939636 1 102

GTG ...

VVF ...

38112 1 - 165220075 - 165220191 1 117

GTG ...

VMP ...

38115 17 + 35883202 - 35883366 1 165

CTG ...

LPV ...

38117 17 - 66091860 - 66091889 1 30

ATG ...

MVL ...

38119 17 - 35149261 - 35149383 1 123

CTG ...

LRW ...

38122 17 - 10216340 - 10216453 1 114

TTG ...

LPF ...

38124 17 - 35161638 - 35161742 1 105

GTG ...

VTI ...

38126 17 + 86827901 - 86827996 1 96

GTG ...

VIR ...

38128 17 + 25133460 - 25133588 1 129

TTG ...

LVL ...

38130 17 - 31987351 - 31987392 1 42

CTG ...

LRV ...

38132 17 - 33939535 - 33939654 1 120

CTG ...

LLD ...

38134 17 - 34113833 - 34114090 1 258

TTG ...

LTK ...

38136 17 - 35120441 - 35120506 1 66

CTG ...

LRR ...

38138 17 + 25050317 - 25050502 1 186

GTG ...

VNH ...

38140 17 + 13013538 - 13013627 1 90

TTG ...

LAS ...

38142 17 - 49476444 - 49476521 1 78

ATG ...

MTR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5