Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

31592 1 + 167354493 - 167354582 1 90

CTG ...

LDV ...

31594 15 + 102483209 - 102483292 1 84

CTG ...

LSG ...

31596 15 + 99725736 - 99725825 1 90

CTG ...

LRS ...

31598 15 - 79604995 - 79605033 1 39

CTG ...

LDR ...

31600 15 - 38500274 - 38500336 1 63

TTG ...

LAA ...

31602 15 - 75895728 - 75895826 1 99

ATG ...

MAS ...

31604 15 - 38501502 - 38501564 1 63

GTG ...

VAR ...

31606 15 + 82347997 - 82348044 1 48

ATG ...

MTF ...

31608 15 - 98658226 - 98658423 1 198

CTG ...

LAD ...

31611 15 + 89569345 - 89569497 1 153

GTG ...

VGY ...

31613 1 - 86350776 - 86350868 1 93

GTG ...

VEA ...

31615 15 - 74813711 - 74813779 1 69

TTG ...

LSC ...

31617 15 + 83571487 - 83571603 1 117

TTG ...

LYV ...

31619 15 + 80235859 - 80236047 1 189

GTG ...

VLC ...

31621 15 - 31498575 - 31498628 1 54

TTG ...

LAG ...

31623 15 + 102447427 - 102447465 1 39

CTG ...

LGL ...

31625 15 + 102490692 - 102490793 1 102

CTG ...

LGR ...

31627 15 - 11986471 - 11986512 1 42

TTG ...

LIL ...

31630 15 + 102445835 - 102445885 1 51

TTG ...

LRL ...

31632 15 + 76948763 - 76948906 1 144

ATG ...

MRL ...

31634 15 + 12171786 - 12171869 1 84

GTG ...

VII ...

31636 15 - 10485802 - 10485924 1 123

GTG ...

VQA ...

31638 15 + 81684738 - 81684983 1 246

GTG ...

VGM ...

31640 15 - 81366343 - 81366444 1 102

CTG ...

LEW ...

31642 15 - 10447065 - 10447169 1 105

CTG ...

LFD ...

31645 15 - 76504098 - 76504214 1 117

CTG ...

LTE ...

31647 15 + 80234108 - 80234167 1 60

ATG ...

MLM ...

31649 15 + 76334083 - 76334208 1 126

CTG ...

LPV ...

31651 15 + 81684789 - 81684983 1 195

GTG ...

VAT ...

31653 15 - 86146281 - 86146388 1 108

TTG ...

LKT ...

31655 15 + 82347988 - 82348044 1 57

TTG ...

LRN ...

31657 15 + 12166202 - 12166303 1 102

TTG ...

LNS ...

31659 15 - 86155067 - 86155105 1 39

GTG ...

VGT ...

31661 1 + 161035775 - 161035840 1 66

ATG ...

MGH ...

31664 15 - 102130662 - 102130724 1 63

TTG ...

LDH ...

31666 15 + 102445844 - 102445885 1 42

CTG ...

LEC ...

31668 1 - 93629036 - 93629227 1 192

TTG ...

LTA ...

31670 15 + 65861684 - 65861755 1 72

GTG ...

VDT ...

31673 15 + 65787162 - 65787197 1 36

ATG ...

MLR ...

31676 15 - 83138287 - 83138403 1 117

TTG ...

LGS ...

31678 15 - 79289568 - 79289714 1 147

GTG ...

VML ...

31681 15 - 73605914 - 73605973 1 60

ATG ...

MMK ...

31683 15 - 81366343 - 81366468 1 126

CTG ...

LVI ...

31685 15 - 75895728 - 75895835 1 108

CTG ...

LLA ...

31687 15 - 83138164 - 83138196 1 33

CTG ...

LRS ...

31689 15 + 76334092 - 76334208 1 117

CTG ...

LGQ ...

31691 15 + 102328556 - 102328600 1 45

ATG ...

MCL ...

31693 15 + 76333468 - 76333677 1 210

CTG ...

LEG ...

31695 15 - 79530155 - 79530331 1 177

CTG ...

LPL ...

31697 15 + 102483257 - 102483292 1 36

GTG ...

VSN ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5