Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

30914 15 + 76332920 - 76333144 1 225

CTG ...

LQG ...

30916 1 + 38033106 - 38033192 1 87

GTG ...

VDQ ...

30918 15 - 89584253 - 89584354 1 102

CTG ...

LGT ...

30921 15 + 76334601 - 76334825 1 225

CTG ...

LVV ...

30923 15 - 103317961 - 103318023 1 63

GTG ...

VSG ...

30925 15 + 81011260 - 81011364 1 105

CTG ...

LEV ...

30928 15 - 88891290 - 88891331 1 42

CTG ...

LWP ...

30930 15 + 81003398 - 81003463 1 66

CTG ...

LTP ...

30933 15 + 12180634 - 12180750 1 117

CTG ...

LVE ...

30935 15 + 34238382 - 34238426 1 45

ATG ...

MSA ...

30937 15 + 93410707 - 93410787 1 81

ATG ...

MKC ...

30939 1 + 87374072 - 87374143 1 72

GTG ...

VGA ...

30941 15 + 76334607 - 76334825 1 219

GTG ...

VTS ...

30943 15 + 81980771 - 81980806 1 36

ATG ...

MVT ...

30945 15 + 81949200 - 81949268 1 69

GTG ...

VVL ...

30948 15 - 102130662 - 102130745 1 84

CTG ...

LVP ...

30950 15 - 10476440 - 10476490 1 51

ATG ...

MTP ...

30952 15 - 79530155 - 79530283 1 129

ATG ...

MGQ ...

30954 15 + 12321538 - 12321594 1 57

TTG ...

LCT ...

30956 15 - 51968479 - 51968511 1 33

CTG ...

LPY ...

30958 15 + 34114066 - 34114116 1 51

GTG ...

VQN ...

30961 15 + 76351327 - 76351485 1 159

TTG ...

LLL ...

30963 15 + 81949215 - 81949268 1 54

TTG ...

LAP ...

30965 1 + 165461305 - 165461487 1 183

CTG ...

LQR ...

30967 15 + 78926755 - 78926808 1 54

GTG ...

VEQ ...

30969 15 + 81011683 - 81011736 1 54

GTG ...

VQD ...

30971 15 - 79687434 - 79687505 1 72

CTG ...

LAV ...

30974 15 + 102490710 - 102490793 1 84

TTG ...

LQT ...

30977 15 - 79530155 - 79530358 1 204

ATG ...

MAV ...

30979 15 - 83138287 - 83138544 1 258

CTG ...

LFD ...

30981 15 - 81870397 - 81870477 1 81

GTG ...

VIP ...

30984 1 + 150412987 - 150413121 1 135

GTG ...

VIS ...

30986 15 - 83367019 - 83367189 1 171

ATG ...

MGN ...

30989 1 + 69873141 - 69873281 1 141

TTG ...

LHY ...

30992 1 - 181818829 - 181818999 1 171

CTG ...

LTS ...

30994 1 + 88227020 - 88227151 1 132

GTG ...

VMV ...

30996 15 + 25622749 - 25622784 1 36

CTG ...

LFS ...

30999 15 + 12180637 - 12180750 1 114

GTG ...

VEK ...

31001 15 - 79602405 - 79602470 1 66

CTG ...

LPL ...

31004 15 - 38518965 - 38519018 1 54

ATG ...

MAQ ...

31006 15 + 74821340 - 74821372 1 33

CTG ...

LSV ...

31008 1 - 93629036 - 93629218 1 183

TTG ...

LAK ...

31010 15 + 75997880 - 75997948 1 69

GTG ...

VHE ...

31013 15 + 35296309 - 35296434 1 126

CTG ...

LSL ...

31016 15 - 99626166 - 99626345 1 180

GTG ...

VKE ...

31019 15 + 100227866 - 100227913 1 48

GTG ...

VRI ...

31022 15 + 81010989 - 81011075 1 87

GTG ...

VQS ...

31024 15 + 76351424 - 76351564 1 141

TTG ...

LQG ...

31026 15 - 76871105 - 76871290 1 186

CTG ...

LAC ...

31029 15 + 82031195 - 82031266 1 72

GTG ...

VTA ...

Previous 269 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5