Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

2405 5 - 134622066 - 134625404 3 120

GTG ...

VAL ...

2407 5 - 92448559 - 92449874 2 42

TTG ...

LLK ...

2409 5 + 136105708 - 136107083 2 45

GTG ...

VEL ...

2412 5 - 38531064 - 38533619 3 198

TTG ...

LNV ...

2414 5 - 38531064 - 38533628 3 207

CTG ...

LSY ...

2416 5 - 148512002 - 148552014 3 63

CTG ...

LRK ...

2418 1 + 134622043 - 134622135 1 93

CTG ...

LSD ...

2421 5 + 33152700 - 33154565 2 30

TTG ...

LQE ...

2423 5 + 138256328 - 138259137 3 222

CTG ...

LAS ...

2425 5 - 137529850 - 137530360 4 237

ATG ...

MGG ...

2427 10 + 18845333 - 18845410 1 78

TTG ...

LVE ...

2429 5 - 38531064 - 38533646 3 225

GTG ...

VCI ...

2431 5 - 148509272 - 148511911 2 102

ATG ...

MTT ...

2433 5 + 17655031 - 17662947 2 63

TTG ...

LKS ...

2436 5 + 91144468 - 91146735 3 126

TTG ...

LAS ...

2438 10 + 77589617 - 77589679 1 63

ATG ...

MPV ...

2441 5 + 33146957 - 33148921 2 147

ATG ...

MPL ...

2443 5 - 134622066 - 134625440 3 156

GTG ...

VWT ...

2445 5 - 134621580 - 134622044 2 165

CTG ...

LGT ...

2447 5 + 91089203 - 91090113 2 78

CTG ...

LDA ...

2449 5 - 148512002 - 148552026 3 75

TTG ...

LFC ...

2451 10 + 56388323 - 56388421 1 99

CTG ...

LRI ...

2454 5 - 4092401 - 4099244 2 228

ATG ...

MER ...

2456 5 - 134622066 - 134625455 3 171

GTG ...

VTG ...

2458 5 - 134622066 - 134625377 3 93

CTG ...

LMT ...

2460 5 - 90264148 - 90264661 2 54

TTG ...

LIE ...

2462 5 + 91088534 - 91089086 2 45

GTG ...

VHL ...

2464 5 - 38545769 - 38546998 2 141

TTG ...

LPG ...

2466 5 - 115298767 - 115300616 2 171

ATG ...

MQT ...

2468 5 - 134622066 - 134625374 3 90

ATG ...

MTE ...

2470 5 - 86663461 - 86664299 2 126

ATG ...

MLR ...

2472 5 - 86663461 - 86664329 3 156

TTG ...

LVL ...

2474 5 - 86660605 - 86661580 2 60

GTG ...

VLA ...

2476 5 - 92448559 - 92449880 2 48

ATG ...

MTL ...

2478 10 - 78177752 - 78177805 1 54

GTG ...

VGH ...

2481 10 + 56387777 - 56387938 1 162

CTG ...

LGP ...

2483 5 - 38545769 - 38547016 2 159

CTG ...

LGR ...

2485 5 + 129793730 - 129844995 3 177

CTG ...

LGE ...

2487 5 - 142905470 - 142905601 2 45

CTG ...

LYS ...

2489 5 - 122489363 - 122491804 3 138

GTG ...

VQF ...

2492 5 + 129794469 - 129844995 2 57

TTG ...

LRA ...

2494 5 + 122441354 - 122443818 2 102

CTG ...

LCP ...

2496 5 + 45509465 - 45511117 2 63

GTG ...

VPL ...

2499 5 + 129794491 - 129845820 4 258

TTG ...

LMM ...

2501 5 + 122401695 - 122403380 2 51

ATG ...

MSS ...

2503 5 + 129793682 - 129844995 3 225

CTG ...

LNP ...

2505 10 + 56387935 - 56387982 1 48

TTG ...

LKS ...

2507 5 + 129794476 - 129845820 4 273

CTG ...

LSK ...

2509 5 + 91144441 - 91146735 3 153

TTG ...

LSL ...

2511 5 + 122401662 - 122403380 2 84

TTG ...

LWM ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5