ORF 72366 | MetamORF

Metam
ORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

72366

Chromosome

7

Strand

+

Start-stop positions

105640803-105640853

Nucleic length (bp)

51

Sequences

Nucleic sequence

GTG ...

Amino acid sequence

VFP ...

Spliced: No

Exons

1

Exons start-end

Genome browsers

UCSC

Transcripts

8 known transcripts

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
588960	ENSMUST00000150479	nonsense_mediated_decay	NCBI:14356	151 - 201	Ribo-seq	AGAACTGTGT	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, R1E
1025037	ENSMUST00000106783	protein_coding	NCBI:14356	609 - 659	Ribo-seq	AGAACTGTGT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
221527	ENSMUST00000106780	protein_coding	NCBI:14356	94 - 144	Ribo-seq	AGAACTGTGT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1067297	ENSMUST00000210350	protein_coding	NCBI:14356	114 - 164	Ribo-seq	AGAACTGTGT	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
72367	ENSMUST00000142874	nonsense_mediated_decay	Gm45799	103 - 153	Ribo-seq	AGAACTGTGT	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Testis
1442533	ENSMUST00000106785	protein_coding	Gm45799	113 - 163	Ribo-seq	AGAACTGTGT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
913922	ENSMUST00000140577	nonsense_mediated_decay	NCBI:14356	76 - 126	Ribo-seq	AGAACTGTGT	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
3849	ENSMUST00000151193	protein_coding	NCBI:14356	101 - 151	Ribo-seq	AGAACTGTGT	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell

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