Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
587516
Chromosome
6
Strand
-
Start-stop positions
128034201-128083513
Nucleic length (bp)
177
Sequences
Nucleic sequence
GTG ...
Amino acid sequence
VLI ...
Spliced: Yes
Exons
4
Exons start-end
128083513-128083482
128083481-128083382
128034245-128034229
128034228-128034201
Genome browsers
ID
Aliases
6720474K14Rik
9430079M16Rik,
AU018597,
ENSMUSG00000030352
MGI:1924558,
NCBI:109246,
OFF:Tspan9
Tspan-9,
Tspan9
Transcripts
1 known transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 577249 | ENSMUST00000127105 | protein_coding | - |
Ribo-seq |
1 |
sORFs_org_Mouse
|
|
3T3
|
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