Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
421713
Chromosome
15
Strand
-
Start-stop positions
76050078-76050755
Nucleic length (bp)
111
Sequences
Nucleic sequence
ATT ...
Amino acid sequence
IWS ...
Spliced: Yes
Exons
3
Exons start-end
76050755-76050704
76050703-76050680
76050112-76050078
Genome browsers
ID
Aliases
AI118201
Crc,
CRIB,
ENSMUSG00000022568
MGI:2145950,
mKIAA0147,
NCBI:105782
OFF:Scrib,
Scrb1,
Scrib
SCRIB1,
vartul
Transcripts
1 known transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 421714 | ENSMUST00000145830 | protein_coding | - |
Ribo-seq |
1 |
sORFs_org_Mouse
|
|
C2C12
|
Export data