Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3409738
Chromosome
1
Strand
-
Start-stop positions
32775981-32817274
Nucleic length (bp)
1617
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LSG ...
Spliced: Yes
Exons
13
Exons start-end
32817274-32817188
32811057-32810911
32810766-32810591
32806611-32806482
32797843-32797763
32791254-32791162
32787075-32786940
32786447-32786362
32782539-32782404
32781145-32781048
32780278-32780085
32779523-32779382
32776091-32775981
Genome browsers
ID
Aliases
ENSG00000134684
HGNC:12840,
NCBI:8565,
OFF:YARS
tyrRS,
YARS,
YRS
YTS
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3409739 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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