Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3409504
Chromosome
1
Strand
-
Start-stop positions
30933211-31065785
Nucleic length (bp)
3675
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MPL ...
Spliced: Yes
Exons
22
Exons start-end
31065785-31065689
31059577-31059204
31028864-31028796
31007102-31006994
31006031-31005853
30995220-30995054
30992660-30992390
30981405-30981312
30980163-30980062
30974802-30974651
30968492-30968354
30967310-30967167
30966278-30965982
30964910-30964674
30953981-30953714
30952363-30952234
30950261-30950127
30945483-30945346
30942123-30941998
30941272-30941151
30936835-30936643
30933342-30933211
Genome browsers
ID
Aliases
ENSG00000134644
HGNC:14957,
KIAA0099,
NCBI:9698
OFF:PUM1,
PUM1,
PUMH1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3409505 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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