ORF 3409438 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3409438

Chromosome

Strand

Start-stop positions

27977282-28058026

Nucleic length (bp)

1611

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MEE ...

Spliced: Yes

Exons

Exons start-end

28058026-28057994
28048426-28048383
28042650-28042571
28038905-28038839
28035680-28035544
28017239-28017154
28013294-28013111
28011086-28010947
28004419-28004336
28000049-27999960
27997378-27997320
27993560-27993400
27989811-27989697
27988656-27988535
27978474-27978374
27977389-27977282

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4031033	ENST00000373863	protein_coding	HGNC:3521	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3409436	UNKNOWN_TRANSCRIPT		HGNC:3521	-	Ribo-seq			1	Erhard2018		HFF

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