Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3409435
Chromosome
1
Strand
-
Start-stop positions
27974466-28058065
Nucleic length (bp)
1761
Sequences
Nucleic sequence
ATC ...
Amino acid sequence
IQS ...
Spliced: Yes
Exons
17
Exons start-end
28058065-28057994
28048426-28048383
28042650-28042571
28038905-28038839
28035680-28035544
28027926-28027789
28017239-28017154
28013294-28013111
28011086-28010947
28004419-28004336
28000049-27999960
27997378-27997320
27993560-27993400
27989811-27989697
27988656-27988535
27978474-27978374
27974546-27974466
Genome browsers
ID
Aliases
DKFZp686C132
ENSG00000158161,
EYA3,
HGNC:3521
NCBI:2140,
OFF:EYA3
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3409436 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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