ORF 3407623 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3407623

Chromosome

Strand

Start-stop positions

944694-959240

Nucleic length (bp)

2250

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAA ...

Spliced: Yes

Exons

Exons start-end

959240-959215
959081-958929
957273-957099
957025-956894
956215-956095
956013-955923
954082-954004
953892-953782
953288-953175
952600-952412
952139-952000
951238-951127
948603-948490
948232-948131
946545-946402
946286-946173
945653-945518
945146-945057
944800-944694

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
93193	ENST00000327044	protein_coding	HGNC:24517	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3407624	UNKNOWN_TRANSCRIPT		HGNC:24517	-	Ribo-seq			1	Erhard2018		HFF

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