Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3403504
Chromosome
1
Strand
-
Start-stop positions
145849444-145858988
Nucleic length (bp)
1887
Sequences
Nucleic sequence
GGC ...
Amino acid sequence
GGA ...
Spliced: Yes
Exons
14
Exons start-end
145858988-145858965
145857004-145856587
145856429-145856345
145856116-145856066
145855824-145855734
145854878-145854744
145854561-145854456
145853884-145853811
145853662-145853502
145851151-145851018
145850937-145850769
145850584-145850451
145850267-145850230
145849710-145849444
Genome browsers
ID
Aliases
ENSG00000131788
FLJ14651,
HGNC:16861,
NCBI:10401
OFF:PIAS3,
PIAS3,
ZMIZ5
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3403496 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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