Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3400864
Chromosome
1
Strand
+
Start-stop positions
40979795-41010245
Nucleic length (bp)
1824
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LSL ...
Spliced: Yes
Exons
18
Exons start-end
40979795-40979829
40983278-40983456
40984821-40984991
40987372-40987472
40988594-40988710
40991165-40991248
40991765-40991845
40995917-40996068
40997394-40997526
41001029-41001117
41002160-41002254
41003114-41003176
41006051-41006094
41007449-41007545
41008659-41008714
41008794-41008890
41009445-41009589
41010161-41010245
Genome browsers
ID
Aliases
CTPS
CTPS1,
ENSG00000171793,
GATD5
HGNC:2519,
NCBI:1503,
OFF:CTPS1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3400859 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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