Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3400255
Chromosome
1
Strand
+
Start-stop positions
28987438-29115797
Nucleic length (bp)
2595
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MTT ...
Spliced: Yes
Exons
19
Exons start-end
28987438-28987905
28993330-28993542
28997215-28997319
29011865-29011907
29015692-29015767
29018224-29018442
29030400-29030487
29033093-29033245
29035826-29035923
29039254-29039426
29053104-29053312
29058589-29058645
29058811-29058852
29060422-29060484
29064982-29065158
29097807-29097935
29109336-29109437
29112368-29112448
29115699-29115797
Genome browsers
Transcripts
1 known transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Gene ID
The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes. |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3400250 | UNKNOWN_TRANSCRIPT | HGNC:3377 | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
|||
| 1086633 | ENST00000347529 | protein_coding | HGNC:3377 | - |
Ribo-seq |
1 |
Johnstone2016
|
|
Brain_tumor,
HEK293, HeLa, HFF |
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