Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3353710
Chromosome
16
Strand
+
Start-stop positions
23836176-24214816
Nucleic length (bp)
2022
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAD ...
Spliced: Yes
Exons
17
Exons start-end
23836176-23836348
23837375-23837406
23988508-23988590
24032136-24032247
24035419-24035547
24092791-24092947
24094163-24094297
24112973-24113069
24123835-24123981
24154684-24154857
24172270-24172361
24174518-24174580
24180790-24180928
24185111-24185191
24185460-24185567
24191090-24191230
24214658-24214816
Genome browsers
ID
Aliases
ENSG00000166501
HGNC:9395,
NCBI:5579,
OFF:PRKCB
PKCB,
PKCĪ²,
PRKCB
PRKCB1,
PRKCB2
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3353699 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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