Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3331729
Chromosome
12
Strand
-
Start-stop positions
121308480-121352340
Nucleic length (bp)
2268
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAS ...
Spliced: Yes
Exons
17
Exons start-end
121352340-121352134
121347881-121347802
121347005-121346896
121346031-121345839
121342069-121342003
121337392-121337291
121335723-121335533
121331428-121331347
121330672-121330583
121328497-121328316
121327231-121327096
121320459-121320385
121319818-121319697
121318608-121318501
121318424-121318277
121309863-121309701
121308691-121308480
Genome browsers
ID
Aliases
ANAPC5
APC5,
ENSG00000089053,
HGNC:15713
NCBI:51433,
OFF:ANAPC5
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3331730 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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