Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3331261
Chromosome
12
Strand
-
Start-stop positions
112029531-112108773
Nucleic length (bp)
2919
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAT ...
Spliced: Yes
Exons
24
Exons start-end
112108773-112108716
112093136-112093051
112090864-112090726
112087801-112087683
112081134-112081060
112078741-112078634
112078266-112078188
112075789-112075678
112074764-112074675
112072064-112071895
112068992-112068880
112061388-112061181
112060359-112060270
112054568-112054388
112053657-112053558
112048443-112048292
112047790-112047665
112043868-112043625
112043211-112043088
112042104-112042039
112040578-112040481
112039339-112039229
112033379-112033233
112029653-112029531
Genome browsers
ID
Aliases
C12orf30
ENSG00000111300,
FLJ13089,
HGNC:25783
NAA25,
NCBI:80018,
OFF:NAA25
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3331262 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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