Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3330481
Chromosome
12
Strand
-
Start-stop positions
96002996-96043375
Nucleic length (bp)
1527
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MLP ...
Spliced: Yes
Exons
17
Exons start-end
96043375-96043289
96029185-96029055
96027564-96027444
96024547-96024479
96022251-96022147
96021137-96021085
96019240-96019168
96018903-96018763
96017580-96017557
96017114-96017044
96015694-96015583
96014999-96014855
96013853-96013750
96013258-96013188
96009148-96009094
96006409-96006314
96003064-96002996
Genome browsers
ID
Aliases
ENSG00000111144
HGNC:6710,
LTA4H,
NCBI:4048
OFF:LTA4H
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3330479 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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