ORF 3329218 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3329218

Chromosome

Strand

Start-stop positions

56731715-56752298

Nucleic length (bp)

1263

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MET ...

Spliced: Yes

Exons

Exons start-end

56752298-56752196
56751195-56751038
56747032-56746926
56746854-56746781
56746181-56746045
56744123-56744065
56743096-56742987
56741837-56741746
56741576-56741435
56739363-56739294
56738525-56738434
56734245-56734147
56731734-56731715

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
301063	ENST00000338193	protein_coding	HGNC:9369	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3329219	UNKNOWN_TRANSCRIPT		HGNC:9369	-	Ribo-seq			1	Erhard2018		HFF

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