Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3327811
Chromosome
12
Strand
-
Start-stop positions
48830469-48845782
Nucleic length (bp)
2463
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAG ...
Spliced: Yes
Exons
16
Exons start-end
48845782-48845574
48844050-48843940
48840106-48840013
48839909-48839844
48838080-48837942
48837657-48837524
48837393-48837281
48837037-48836894
48836794-48836569
48836266-48836121
48834497-48834320
48833519-48833277
48832573-48832422
48832186-48832078
48831316-48831142
48830692-48830469
Genome browsers
ID
Aliases
DDX23
ENSG00000174243,
HGNC:17347,
NCBI:9416
OFF:DDX23,
prp28,
PRPF28
SNRNP100,
U5-100K
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3327809 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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