Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3324313
Chromosome
12
Strand
+
Start-stop positions
110281727-110346470
Nucleic length (bp)
3192
Sequences
Nucleic sequence
GTG ...
Amino acid sequence
VRG ...
Spliced: Yes
Exons
20
Exons start-end
110281727-110281907
110282604-110282621
110282713-110282795
110292020-110292124
110296599-110296737
110322992-110323072
110326390-110326475
110327553-110328017
110332597-110332685
110333181-110333283
110334012-110334143
110339281-110339403
110339503-110339721
110340659-110340994
110342228-110342448
110343232-110343434
110344886-110344971
110345249-110345382
110346001-110346118
110346201-110346470
Genome browsers
ID
Aliases
ATP2A2
ATP2B,
DAR,
ENSG00000174437
HGNC:812,
NCBI:488,
OFF:ATP2A2
SERCA2
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3324302 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
Export data