ORF 3323953 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3323953

Chromosome

Strand

Start-stop positions

104215803-104348421

Nucleic length (bp)

1950

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MGC ...

Spliced: Yes

Exons

Exons start-end

104215803-104215893
104251527-104251678
104258019-104258079
104288931-104289040
104311290-104311412
104313245-104313317
104315777-104315896
104318913-104319055
104319470-104319585
104321091-104321316
104325337-104325429
104326347-104326423
104327515-104327671
104331534-104331641
104334237-104334332
104339139-104339273
104348353-104348421

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3616310	ENST00000429002	protein_coding	HGNC:12437	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3323915	UNKNOWN_TRANSCRIPT		OVERLAPPING_GENES_EID3_TXNRD1_chr12	-	Ribo-seq			1	Erhard2018		HFF

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