Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3321955
Chromosome
12
Strand
+
Start-stop positions
56128287-56143862
Nucleic length (bp)
3378
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LGR ...
Spliced: Yes
Exons
31
Exons start-end
56128287-56128709
56130582-56130623
56130791-56130925
56131040-56131113
56131244-56131316
56131477-56131566
56131749-56131804
56132209-56132332
56132421-56132597
56132719-56132801
56133417-56133465
56133588-56133674
56133781-56133873
56134080-56134181
56134342-56134428
56136744-56136893
56137218-56137373
56137499-56137675
56137832-56137914
56138026-56138074
56138183-56138272
56138404-56138499
56138768-56138839
56138927-56139013
56142285-56142425
56142578-56142732
56142835-56142933
56143017-56143148
56143228-56143333
56143580-56143629
56143823-56143862
Genome browsers
ID
Aliases
ENSG00000139641
ESYT1,
FAM62A,
HGNC:29534
KIAA0747,
MBC2,
NCBI:23344
OFF:ESYT1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3321953 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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