Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3319078
Chromosome
12
Strand
+
Start-stop positions
6495099-6528091
Nucleic length (bp)
2759
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAP ...
Spliced: Yes
Exons
20
Exons start-end
6495099-6495225
6509717-6509792
6514265-6514392
6514464-6514587
6514773-6514920
6516828-6517025
6517365-6517499
6517596-6517683
6517779-6517959
6520986-6521110
6521798-6522037
6522828-6523002
6523262-6523346
6525583-6525716
6526068-6526200
6526287-6526371
6526448-6526615
6526891-6527063
6527777-6527888
6527968-6528091
Genome browsers
ID
Aliases
CAP-D2
CNAP1,
ENSG00000010292,
hCAP-D2
HGNC:24305,
KIAA0159,
NCAPD2
NCBI:9918,
OFF:NCAPD2
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3319061 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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