ORF 3317638 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3317638

Chromosome

Strand

Start-stop positions

111741596-111766361

Nucleic length (bp)

1806

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAG ...

Spliced: Yes

Exons

Exons start-end

111766361-111766248
111765384-111765294
111764905-111764805
111761051-111760819
111759951-111759804
111755450-111755295
111755094-111754980
111754569-111754499
111753577-111753443
111752332-111752159
111748014-111747954
111743530-111743376
111742665-111742523
111742144-111742053
111741612-111741596

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3317636	UNKNOWN_TRANSCRIPT		HGNC:9303	-	Ribo-seq			1	Erhard2018		HFF
1730247	ENST00000341980	protein_coding	HGNC:9303	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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