ORF 3315214 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3315214

Chromosome

Strand

Start-stop positions

64765454-64778392

Nucleic length (bp)

2022

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAT ...

Spliced: Yes

Exons

Exons start-end

64778392-64777987
64776626-64776498
64773505-64773430
64770408-64770256
64770053-64769964
64769609-64769426
64769338-64769223
64769129-64769022
64768286-64768106
64767844-64767571
64767251-64767192
64767079-64766900
64765518-64765454

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3315212	UNKNOWN_TRANSCRIPT		HGNC:12950	-	Ribo-seq			1	Erhard2018		HFF
4339812	ENST00000227503	protein_coding	HGNC:12950	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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