ORF 3314989 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3314989

Chromosome

Strand

Start-stop positions

62832952-62839570

Nucleic length (bp)

1158

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAA ...

Spliced: Yes

Exons

Exons start-end

62839570-62839507
62839428-62839322
62839235-62839114
62836036-62835961
62835841-62835695
62835532-62835431
62834527-62834427
62834331-62834276
62833937-62833792
62833674-62833618
62833131-62832952

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4327450	ENST00000525239	protein_coding	HGNC:25529	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3314990	UNKNOWN_TRANSCRIPT		HGNC:25529	-	Ribo-seq			1	Erhard2018		HFF

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