Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3314926
Chromosome
11
Strand
-
Start-stop positions
62707247-62727156
Nucleic length (bp)
2241
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MEV ...
Spliced: Yes
Exons
14
Exons start-end
62727156-62726619
62724426-62724291
62723990-62723914
62723726-62723587
62722903-62722813
62722713-62722601
62722380-62722117
62721942-62721820
62721423-62721295
62720191-62720023
62717189-62716989
62715937-62715864
62715607-62715500
62707324-62707247
Genome browsers
Transcripts
1 known transcript
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MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Gene ID
The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes. |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 286563 | ENST00000403734 | nonsense_mediated_decay | HGNC:49189 | - |
Ribo-seq |
1 |
Johnstone2016
|
|
Brain_tumor,
HEK293, HeLa, HFF |
||
| 3314927 | UNKNOWN_TRANSCRIPT | OVERLAPPING_GENES_BSCL2_to_HNRNPUL2-BSCL2_chr11 | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
|||
| 4870092 | UNKNOWN_TRANSCRIPT | HGNC:49189 | - |
Predicted |
1 |
Samandi2017
|
|
|
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