Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3314818
Chromosome
11
Strand
-
Start-stop positions
62625815-62646599
Nucleic length (bp)
2901
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAA ...
Spliced: Yes
Exons
25
Exons start-end
62646599-62646562
62639731-62639627
62639467-62639359
62639110-62638983
62635000-62634821
62634375-62634310
62633514-62633445
62633271-62633184
62633101-62633005
62632745-62632565
62631183-62631030
62630836-62630601
62630505-62630379
62630276-62630197
62629957-62629814
62629684-62629588
62629295-62629194
62629012-62628769
62627353-62627289
62627124-62627048
62626934-62626860
62626684-62626571
62626447-62626335
62626165-62626065
62625924-62625815
Genome browsers
ID
Aliases
ENSG00000089597
G2AN,
GANAB,
GIIA
GluII,
HGNC:4138,
KIAA0088
NCBI:23193,
OFF:GANAB
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3314819 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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