Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3314770
Chromosome
11
Strand
-
Start-stop positions
62593875-62601480
Nucleic length (bp)
2037
Sequences
Nucleic sequence
GTG ...
Amino acid sequence
VRP ...
Spliced: Yes
Exons
18
Exons start-end
62601480-62601423
62600689-62600622
62600259-62600166
62598639-62598522
62598390-62598327
62598141-62598024
62597712-62597610
62597415-62597316
62596825-62596637
62596532-62596458
62596337-62596279
62596107-62596010
62595891-62595752
62595492-62595264
62595070-62594981
62594634-62594516
62594407-62594259
62594040-62593875
Genome browsers
ID
Aliases
ENSG00000149480
HGNC:7411,
MTA1-L1,
MTA1L1
MTA2,
NCBI:9219,
OFF:MTA2
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 902739 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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