Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3314050
Chromosome
11
Strand
-
Start-stop positions
47792780-47840560
Nucleic length (bp)
3114
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MEE ...
Spliced: Yes
Exons
26
Exons start-end
47840560-47840378
47840065-47839843
47837623-47837545
47837001-47836887
47835809-47835651
47822164-47822087
47821821-47821724
47819458-47819374
47818124-47818056
47816029-47815946
47815649-47815479
47813415-47813316
47813047-47812882
47812429-47812302
47812224-47812064
47808529-47808396
47807140-47807070
47806312-47806153
47804618-47804549
47803536-47803438
47801930-47801811
47798463-47798368
47798262-47798168
47798074-47797978
47797884-47797779
47792946-47792780
Genome browsers
ID
Aliases
ENSG00000030066
FLJ22583,
HGNC:18017,
KIAA0197
NCBI:23279,
NUP160,
OFF:NUP160
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3314048 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
Export data