Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3313921
Chromosome
11
Strand
-
Start-stop positions
47418835-47426279
Nucleic length (bp)
1320
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MNL ...
Spliced: Yes
Exons
12
Exons start-end
47426279-47426205
47425950-47425867
47425246-47425121
47424711-47424607
47424491-47424429
47424183-47424046
47422973-47422830
47422722-47422574
47420727-47420631
47420409-47420264
47419197-47419116
47418945-47418835
Genome browsers
ID
Aliases
ENSG00000165916
HGNC:9549,
NCBI:5702,
OFF:PSMC3
PSMC3,
TBP-1,
TBP1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3313922 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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