Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3313492
Chromosome
11
Strand
-
Start-stop positions
33085087-33161325
Nucleic length (bp)
2154
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MSG ...
Spliced: Yes
Exons
21
Exons start-end
33161325-33161299
33141986-33141885
33141762-33141667
33108418-33108386
33108000-33107903
33106064-33105998
33105917-33105883
33105693-33105567
33103184-33103107
33102339-33102177
33099717-33099608
33099150-33099034
33098764-33098690
33096978-33096835
33096408-33096306
33092340-33092271
33090727-33090532
33087141-33086988
33085989-33085895
33085773-33085713
33085289-33085087
Genome browsers
ID
Aliases
CstF-77
CSTF3,
ENSG00000176102,
HGNC:2485
NCBI:1479,
OFF:CSTF3
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3313493 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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