Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3312889
Chromosome
11
Strand
-
Start-stop positions
10801055-10807295
Nucleic length (bp)
1332
Sequences
Nucleic sequence
GTG ...
Amino acid sequence
VES ...
Spliced: Yes
Exons
13
Exons start-end
10807295-10807255
10806885-10806820
10806047-10805907
10805015-10804913
10804418-10804287
10804203-10804137
10804050-10803899
10803590-10803480
10803294-10803211
10803128-10803030
10802435-10802294
10802209-10802049
10801087-10801055
Genome browsers
ID
Aliases
DAP5
EIF4G2,
ENSG00000110321,
HGNC:3297
NAT1,
NCBI:1982,
OFF:EIF4G2
p97
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3312881 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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