Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3312460
Chromosome
11
Strand
-
Start-stop positions
6614546-6619400
Nucleic length (bp)
1692
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MGL ...
Spliced: Yes
Exons
13
Exons start-end
6619400-6619384
6619267-6619196
6618915-6618776
6617776-6617626
6617428-6617301
6617153-6616975
6616859-6616661
6616503-6616315
6616074-6616005
6615562-6615442
6615329-6615171
6614991-6614866
6614686-6614546
Genome browsers
ID
Aliases
CLN2
ENSG00000166340,
HGNC:2073,
NCBI:1200
OFF:TPP1,
SCAR7,
TPP1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3312461 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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