ORF 3312079 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3312079

Chromosome

Strand

Start-stop positions

3001188-3057367

Nucleic length (bp)

2181

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAD ...

Spliced: Yes

Exons

Exons start-end

3057367-3057343
3042256-3042165
3040984-3040896
3039931-3039835
3039292-3039194
3038199-3038050
3029443-3029303
3029084-3028996
3026797-3026676
3020332-3020220
3019267-3019139
3018749-3018620
3018511-3018408
3017954-3017857
3017295-3017106
3015849-3015781
3012276-3012195
3006959-3006879
3005433-3005366
3002600-3002541
3002053-3001962
3001248-3001188

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3312077	UNKNOWN_TRANSCRIPT		HGNC:1493	-	Ribo-seq			1	Erhard2018		HFF
3551463	ENST00000278224	protein_coding	HGNC:1493	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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