Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3312076
Chromosome
11
Strand
-
Start-stop positions
3001114-3057367
Nucleic length (bp)
2496
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAD ...
Spliced: Yes
Exons
23
Exons start-end
3057367-3057343
3048001-3047753
3042256-3042165
3040984-3040896
3039931-3039835
3039292-3039194
3038199-3038050
3029443-3029303
3029084-3028996
3026797-3026676
3020332-3020220
3019267-3019139
3018749-3018620
3018511-3018408
3017954-3017857
3017295-3017106
3015849-3015781
3012276-3012195
3006959-3006879
3005433-3005366
3002600-3002541
3002053-3001970
3001248-3001114
Genome browsers
ID
Aliases
CARS
CARS1,
ENSG00000110619,
HGNC:1493
NCBI:833,
OFF:CARS
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3312077 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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