Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3309106
Chromosome
11
Strand
+
Start-stop positions
70407298-70435162
Nucleic length (bp)
1653
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MWK ...
Spliced: Yes
Exons
16
Exons start-end
70407298-70407384
70407518-70407591
70409831-70409960
70414542-70414652
70415663-70415717
70417013-70417123
70419746-70419856
70420400-70420510
70421470-70421580
70422940-70422995
70425332-70425401
70429051-70429199
70431191-70431280
70433101-70433278
70433647-70433718
70435026-70435162
Genome browsers
ID
Aliases
CTTN
EMS1,
ENSG00000085733,
HGNC:3338
NCBI:2017,
OFF:CTTN
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3309086 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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