Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3309001
Chromosome
11
Strand
+
Start-stop positions
68537665-68614677
Nucleic length (bp)
2376
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MFW ...
Spliced: Yes
Exons
20
Exons start-end
68537665-68537891
68544838-68545024
68548067-68548204
68551121-68551186
68554145-68554257
68558566-68558679
68564303-68564432
68569748-68569897
68571040-68571104
68574109-68574224
68575958-68576043
68587927-68588024
68590660-68590714
68591576-68591706
68596097-68596218
68600341-68600494
68601863-68601969
68603342-68603492
68609904-68610023
68614632-68614677
Genome browsers
ID
Aliases
C11orf23
DKFZp781E17107,
DKFZp781E2374,
DKFZp781O2362
ENSG00000110075,
FLJ11058,
FLJ43065
HGNC:1173,
KIAA1558,
MGC125711
MGC125712,
NCBI:55291,
OFF:PPP6R3
PP6R3,
PPP6R3,
SAP190
SAPL,
SAPLa,
SAPS3
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3308963 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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