ORF 3308998 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3308998

Chromosome

Strand

Start-stop positions

68537665-68613117

Nucleic length (bp)

2640

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MFW ...

Spliced: Yes

Exons

Exons start-end

68537665-68537891
68544838-68545024
68548067-68548204
68551121-68551186
68554145-68554257
68558566-68558679
68564303-68564432
68567014-68567166
68569748-68569897
68571040-68571104
68574109-68574224
68575958-68576043
68583043-68583129
68587927-68588024
68590660-68590714
68591576-68591706
68596097-68596218
68600341-68600494
68601863-68601969
68603342-68603492
68603527-68603541
68609901-68610023
68613066-68613117

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3308963	UNKNOWN_TRANSCRIPT		HGNC:1173	-	Ribo-seq			1	Erhard2018		HFF
482842	ENST00000524845	protein_coding	HGNC:1173	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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