Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3308482
Chromosome
11
Strand
+
Start-stop positions
65961781-65979030
Nucleic length (bp)
2403
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MGS ...
Spliced: Yes
Exons
20
Exons start-end
65961781-65962093
65964074-65964131
65964515-65964570
65965092-65965218
65965342-65965447
65965702-65965779
65965887-65965986
65966076-65966218
65966350-65966556
65967259-65967383
65967471-65967586
65967679-65967821
65976395-65976568
65976656-65976766
65977014-65977101
65977563-65977653
65977764-65977899
65978600-65978689
65978793-65978914
65979012-65979030
Genome browsers
ID
Aliases
Ara1
ENSG00000175467,
HAF,
HGNC:10538
NCBI:9092,
OFF:SART1,
SART1
SNRNP110,
Snu66
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3308480 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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