Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3308338
Chromosome
11
Strand
+
Start-stop positions
65525154-65538540
Nucleic length (bp)
2364
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MWF ...
Spliced: Yes
Exons
18
Exons start-end
65525154-65525264
65525574-65525714
65525921-65526043
65526124-65526350
65526783-65526873
65526962-65527117
65530629-65530787
65531576-65531683
65532692-65532805
65535227-65535382
65535953-65536141
65536259-65536334
65536586-65536750
65536986-65537128
65537809-65537880
65538004-65538182
65538270-65538324
65538442-65538540
Genome browsers
ID
Aliases
ENSG00000142186
GKLP,
HGNC:14372,
HT019
MGC78454,
NCBI:57410,
NKTL
NTKL,
OFF:SCYL1,
P105
SCYL1,
TAPK,
TEIF
TRAP
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3308333 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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