Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3308251
Chromosome
11
Strand
+
Start-stop positions
65262254-65297269
Nucleic length (bp)
1836
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LGG ...
Spliced: Yes
Exons
18
Exons start-end
65262254-65262371
65266582-65266706
65267477-65267568
65268672-65268729
65275892-65275998
65278730-65278923
65279538-65279626
65280992-65281147
65281670-65281732
65282479-65282521
65287716-65287840
65289050-65289088
65289799-65289872
65294153-65294261
65294546-65294652
65295540-65295599
65295864-65295990
65297120-65297269
Genome browsers
ID
Aliases
ENSG00000014138
FLJ21662,
HGNC:30073,
NCBI:23649
OFF:POLA2,
POLA2
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3308240 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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