Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3308236
Chromosome
11
Strand
+
Start-stop positions
65182702-65211286
Nucleic length (bp)
2145
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MSE ...
Spliced: Yes
Exons
21
Exons start-end
65182702-65182968
65183128-65183197
65183474-65183592
65185917-65186050
65186170-65186338
65187215-65187298
65187955-65188040
65188414-65188488
65188586-65188746
65204683-65204858
65205710-65205721
65206463-65206674
65206780-65206819
65208055-65208120
65208205-65208262
65209323-65209387
65209849-65209917
65210018-65210096
65210336-65210452
65210814-65210872
65211260-65211286
Genome browsers
ID
Aliases
CANP
CANPL1,
CAPN1,
ENSG00000014216
HGNC:1476,
muCANP,
muCL
NCBI:823,
OFF:CAPN1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3308207 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
Export data