Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3307603
Chromosome
11
Strand
+
Start-stop positions
62124040-62151976
Nucleic length (bp)
2880
Sequences
Nucleic sequence
TTG ...
Amino acid sequence
LLL ...
Spliced: Yes
Exons
18
Exons start-end
62124040-62124163
62128151-62128301
62128770-62128883
62129782-62130590
62137832-62137883
62138713-62138770
62138888-62139005
62140234-62140285
62140704-62140821
62140913-62141044
62144982-62145091
62145169-62145289
62145629-62145751
62146658-62146902
62148476-62148554
62148739-62148846
62150057-62150207
62151762-62151976
Genome browsers
ID
Aliases
ENSG00000149503
FLJ31633,
HGNC:6058,
INCENP
NCBI:3619,
OFF:INCENP
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3307598 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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