Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3307576
Chromosome
11
Strand
+
Start-stop positions
61828391-61863790
Nucleic length (bp)
1161
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MGK ...
Spliced: Yes
Exons
10
Exons start-end
61828391-61828597
61837778-61837888
61840334-61840531
61840624-61840725
61848159-61848284
61857011-61857071
61857454-61857530
61862972-61863069
61863282-61863378
61863707-61863790
Genome browsers
ID
Aliases
D6D
DES6,
ENSG00000134824,
FADS2
FADSD6,
HGNC:3575,
LLCDL2
NCBI:9415,
OFF:FADS2,
SLL0262
TU13
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3307556 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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